NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26470J50227_1000154

Scaffold JGI26470J50227_1000154


Overview

Basic Information
Taxon OID3300003375 Open in IMG/M
Scaffold IDJGI26470J50227_1000154 Open in IMG/M
Source Dataset NameFreshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32024
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (90.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameTrout Bog Lake, Wisconsin, USA
CoordinatesLat. (o)46.0409Long. (o)-89.686Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F009741Metagenome / Metatranscriptome313Y
F014843Metagenome / Metatranscriptome259Y
F019092Metagenome / Metatranscriptome231Y
F025484Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
JGI26470J50227_100015423F014843AGGVNILLSLDGVLSSDTGEPIRAGVALYYALNSSNRVAIVTSRTKEDAEHWLFSHGVINYDDLIDFSYNLEGEDLRKRQFTIARSHAPVELYVDADPSMCAWVFEHQKVPTLLVSHPSYAKVENRPDAPSKVRKWSDIEEAVTRVNIARTLDYKKPDPELGEWGD*
JGI26470J50227_100015426F019092AGGAGMSNVPILGEKKMDNEPMFRLLFCLVCQTLEELPPYDGEPELDHLLAIACEQHVFPSGEPHKGKLFVLPLRAWAKPESKKEIIRQIKGGGSAGLDELDDKFYESRSTFMEDAMTCYVRHNKPKDGCDDWQHKSKLLIPNTVKERKAEGMARYQDEAGPKTYLCNFCPVSIAVNQRKQKLLGGRP*
JGI26470J50227_100015430F005167AGGAMAVNSSRSMNKSLDEGTTDGKYRKARPDTELIPGLGDEATINNRQSLHPFYGYGFLTSEYPNKVNPGK*
JGI26470J50227_100015431F025484GGAGGMDDGSGGLILDLQARQIAENAIRYNGSAPCPTCGVIMNPVEFMNNRGHCLSCLTQKKMSRMKGKMA*
JGI26470J50227_100015432F009741GGCGGMTQTFDGNYDYTKPWRAPVQPDQVAKQYTYSGPWATNMERLTQQALMVMTIPGADLQQMVRPPLPQIRLFPDRFGYGDRSQPGIEDIVTIDRNYTEPRVSWYSGGVAGYSAAARNDLGGI
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