NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26470J50227_1000458

Scaffold JGI26470J50227_1000458


Overview

Basic Information
Taxon OID3300003375 Open in IMG/M
Scaffold IDJGI26470J50227_1000458 Open in IMG/M
Source Dataset NameFreshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16822
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (51.52%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameTrout Bog Lake, Wisconsin, USA
CoordinatesLat. (o)46.0409Long. (o)-89.686Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F023777Metagenome / Metatranscriptome208Y
F030333Metagenome185Y
F032569Metagenome179Y
F034448Metagenome174Y
F040990Metagenome160Y
F104347Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
JGI26470J50227_100045811F040990N/AMNYYYEIDPGYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSTKVWLENANGVYLIKPQWDARRHRVDKHEFTIVKLRAKTIKWWSGE*
JGI26470J50227_100045812F015302GGTGGVSKDEYYANTAARLDTIIGGDTQHFLRLQRVKNEYDELARAVPVGQGFLTFDDYVREYYGVKLQFDGDNVTLAYSIVDEKKHLMFILKFNR*
JGI26470J50227_100045813F034448N/AMHVNNYTLPRPPEKALNQCHAVYINDPAFRMWAMKKYCRENNLSLMWSELVETSDVSAYFDEAAAFYFIDPADATFFTLKFK*
JGI26470J50227_100045814F030333N/AMVGERNPQLTVSVKTSSHYTECEPWCMCNIGNWNVTWWRDFPDIAMSVALGQGPQPETYWFANERDALMFRLRFQ*
JGI26470J50227_100045820F023777AGGAGMAVKSWFLSVVDTATHKPVIHKMFFTAPEMNKFIKEQNILEEYKKPQYYIVKENY*
JGI26470J50227_100045823F104347GGAMDSFRQWYLNNQKEITWFLIGFLTLSGFQDLGQGNYVGAAISFGLAYINYKLN*
JGI26470J50227_10004589F032569N/AMIRVNVLNDAFNRAFWNAKRTLPVEHLETPRQYGRRCREAFRYRVDPNSPRGAFDTVYYIFDNDEDYTWFMLRWG*
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