Scaffold JGI26470J50227_1000592

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26470J50227_1000592

Scaffold JGI26470J50227_1000592

Overview

Basic Information
Taxon OID	3300003375 Open in IMG/M
Scaffold ID	JGI26470J50227_1000592 Open in IMG/M
Source Dataset Name	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14486
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (79.17%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Trout Bog Lake, Wisconsin, USA
Coordinates	Lat. (^o)	46.0409	Long. (^o)	-89.686	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021463	Metagenome	218	Y
F075594	Metagenome	118	N
F082043	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_100059215	F082043	GGA	MAESFSYKITTESELFTFDFTQVLTAAETILTAVCTVIVMNGVDPSPSSILQSTAIIVNKTASQRVVAGLAEVTYRLEMTITTSLGNTYVGVGDLTIYDASQV*
JGI26470J50227_100059222	F021463	N/A	MPDQLETRVVRLEVNQVNHAEDIKELRETTVDLKQTMHSIEKNLSQIKYIAVGALAVVVAQSIGLDKAIRLLFGS*
JGI26470J50227_100059223	F075594	GGA	MSSVFTVNRDQIISLALRKLGVLELGSVPDSETVANASLALNLFVKQMATEGLKLWTVNELVVPLVNGQTEYVLGPVSQNPTTDLDTPKPLKIIQGWLRQITVSPPIDIPLQILSQQEYNTLGSKFSTGVANSIYYQIRQNSGNLYAYLTPNYNAAYQYELHVMAQQPIEDINYGSSIPNFPNEWMNTLVWNLADQLAIEYSLPVNHRQEIAQRAKMYQDQLTDWDVESTSTFFQADLRMSNVTFGQPN*

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