NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26470J50227_1000722

Scaffold JGI26470J50227_1000722


Overview

Basic Information
Taxon OID3300003375 Open in IMG/M
Scaffold IDJGI26470J50227_1000722 Open in IMG/M
Source Dataset NameFreshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12921
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (79.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameTrout Bog Lake, Wisconsin, USA
CoordinatesLat. (o)46.0409Long. (o)-89.686Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016247Metagenome248Y
F037052Metagenome168Y
F048757Metagenome147N

Sequences

Protein IDFamilyRBSSequence
JGI26470J50227_100072211F048757GAGMNLKQLLRSAGVSNNIIKEVERKAKMTTAQQEIEHQEKAAAMAKMMLNDVMPHLHGALNKTPPSKPKKTIIIPD*
JGI26470J50227_100072217F016247GGAGMSHFIVEHKYKGHYVMETITGVEDLDTSRFEDILGIWVCDSLQELQVMEHELKEMRYARSCQPS*
JGI26470J50227_10007227F037052N/AMIDMGMEGASQKMIWSALGISKSTAESWKKKYPDFAEALELSLVHAQAFWEREILANVNNKGFNSRIAEIALRGQFQQDYRETRDTKVDLKADVVIDFNGAVSDLIKQLKEAK*
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