NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25910J50241_10007494

Scaffold JGI25910J50241_10007494


Overview

Basic Information
Taxon OID3300003388 Open in IMG/M
Scaffold IDJGI25910J50241_10007494 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3967
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F010462Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
JGI25910J50241_100074943F000716N/AMKNLEIEIKNYQLNSDKTYMKYELDKYSEYQNYLYKRALYGLNALNEKELITICSKKKQRILNVYKKAQTILNVLKQKISINYTNSLFLNLFPNSNLTTSLIENTEIDEKFKNCLTFKDLNINKPDIITIFIQEGVLPKNFLNLKEMPVTLPRLKNETKA*
JGI25910J50241_100074945F010462N/AMLYQLPNGKVIYISIEDYLDLTDEDIQMFMSMNCGEYVRDPFKGSAVESNTKEKYYDFEFLSQDDELLNNISSDDEPFDDIIDLSDDTEI*
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