NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25910J50241_10011840

Scaffold JGI25910J50241_10011840


Overview

Basic Information
Taxon OID3300003388 Open in IMG/M
Scaffold IDJGI25910J50241_10011840 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3126
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010832Metagenome / Metatranscriptome298Y
F017612Metagenome239N
F041003Metagenome160N
F082589Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
JGI25910J50241_100118402F082589GGALVSLLKNQQKGNVMQNDKIYEVASDLYFYFIDLYGAREQCVIENDDYSENTELGRELYYQIEDELVKNTQPTKN*
JGI25910J50241_100118404F041003GGAGGMKAWTPPTDYLDPPKPPRHYKYVWLRFDIKTKKFKYPLVRHKQLKNKKRFPFIYIKHYGKCVGIEGLTLAKVKI*
JGI25910J50241_100118406F010832GGAGGMRDIKDVVAWLEEELAHFEMAVEQYNYVSKADEIRYRMAQELLAWTLGYKFDKKYLASPVSRETCNSEHDTKAFGGRI*
JGI25910J50241_100118407F017612GGAGGMSIPDTDMHIGDLYEETLEKYSSGQLKKDGLIMLPEEALQHFINKAREEGFTDNMIENSAEELLYDLEDVEENKYKQYLEEKE*
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