NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25909J50240_1013029

Scaffold JGI25909J50240_1013029


Overview

Basic Information
Taxon OID3300003393 Open in IMG/M
Scaffold IDJGI25909J50240_1013029 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1995
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031872Metagenome / Metatranscriptome181N
F033435Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
JGI25909J50240_10130291F033435GGAGLSSIFDNIPKLEGRPNYSVDIERFIGAPGAFVFREPKASDLFPRPEVEKMLKIAFPEFPAQMLQILMIMARCYVTQAGDGEINPARRFAQLARDRSDIYLYTVGEFARAFP
JGI25909J50240_10130293F031872GAGGMVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDNGQDDTTAMCGGRILTSSVHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQSVTSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV*
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