NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26532J50257_10050219

Scaffold JGI26532J50257_10050219


Overview

Basic Information
Taxon OID3300003403 Open in IMG/M
Scaffold IDJGI26532J50257_10050219 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_plan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Goldbacteria → unclassified Candidatus Goldbacteria → Candidatus Goldbacteria bacterium HGW-Goldbacteria-1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F007322Metagenome353Y

Sequences

Protein IDFamilyRBSSequence
JGI26532J50257_100502192F001866GAGLQSTIVVVSDDDSALIGDAQSMRIIELAWSIAFGAELEQERAIDRRQHLHSVVASIRDDDSMSIIIDRNACWGVELTRLTSFVADREQEREIDRRQEHQSIVAGIGYDDATMMLVDRNALRRVELEIS*
JGI26532J50257_100502193F007322GAGGMTVIDRKAPWIVELAWLVAILTELGHERAAITREYLHSMMPEISDEQEILMMVEHQASRIAELAISTAMLLGADRELDSSITIKSIVSHLFQLQSLTTTKRCSKLQTAQAKEMKI*
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