NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26086J50260_1015729

Scaffold JGI26086J50260_1015729


Overview

Basic Information
Taxon OID3300003410 Open in IMG/M
Scaffold IDJGI26086J50260_1015729 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2512
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021020Metagenome / Metatranscriptome221Y
F034945Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
JGI26086J50260_10157296F021020N/AMSDVINLRNTVMTENYDLNIWDXEGYETEYEKEGWVINVYQYPAVGSPYGSGTMLEDRTITLTPTEAKRLTLGWGEDLGGDYTPDSDFWLDKDSFFETYTDIPERVANLLWALPAYEQSIDLWEHFTEESG*
JGI26086J50260_10157297F034945AGGMGDRANVGIKGSDGNTVFLYLHWGGEDRHGIVANALAHAMPREGDESYFTRIFISRVIXTDWDXETGVGFSINKLPATGDGYDVPVYNYKTKEIDIMEEXWDHAGGFVKHTDIVYPRDMYLAEFGMGANVNV*
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