NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26086J50260_1044938

Scaffold JGI26086J50260_1044938


Overview

Basic Information
Taxon OID3300003410 Open in IMG/M
Scaffold IDJGI26086J50260_1044938 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006020Metagenome / Metatranscriptome383Y
F064739Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
JGI26086J50260_10449382F006020GGAGMRATDIVRQVLDLLDQVEGQHDIQDDAIDAEVHVHQNNEPDDRFKSILAMLDSNSFGAYANTPNEVIAPIEAVTTDAGGGVNGPKHPHDIRTAHSSMYPDQQEKF*
JGI26086J50260_10449383F064739AGGAGMANITLNYKGLTGKQGTITAADTATFISLITLIVADEDPTVGVLTNSDYDIALERDTSITDVANGSDPIAVGVGNLGLVDGDTIICIDDKKNLLTTNTKEVRQERKGRIASVKREREG
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