Scaffold JGI25911J50253_10031362

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25911J50253_10031362

Scaffold JGI25911J50253_10031362

Overview

Basic Information
Taxon OID	3300003411 Open in IMG/M
Scaffold ID	JGI25911J50253_10031362 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1933
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019968	Metagenome / Metatranscriptome	226	Y
F031868	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25911J50253_100313621	F019968	AGAAGG	MAKNDVGVICSMSYYEMKLMTAVLSRVLLDNETRGENTKKRITTLISKLNNMLTKQCTN*
JGI25911J50253_100313622	F019968	AGGAG	MSYYEMKLMTCALSRILLENEVRGINTKKSITTLISKLNNMLTKQC*
JGI25911J50253_100313627	F031868	AGGA	MSSIKTVKEEIERLVLESEKKPHIVQTYFEYYYALLDHSDLTLDEFFKLYPQYDVEXTXSLYWKQFMKQWKEIWTDKA*

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