NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25911J50253_10086658

Scaffold JGI25911J50253_10086658


Overview

Basic Information
Taxon OID3300003411 Open in IMG/M
Scaffold IDJGI25911J50253_10086658 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)982
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002387Metagenome / Metatranscriptome565Y
F005504Metagenome / Metatranscriptome398Y
F037727Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
JGI25911J50253_100866582F037727GAGMKIHRISLIQDNENEIQDTNNPDWNFLQGQIVATEHLLSVATDIMNDNERI*
JGI25911J50253_100866584F002387GAGGMASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYDIKEGDEGYLC*
JGI25911J50253_100866585F005504N/ALTKLSNLVPNCLLTLEFEEETGWGGEYEIVRGEVKELAEWENRCYACQSFDTLSYCENDCGEFCSECEHGSWRDEEAMKECQTHMLTLPIKTYTQEEALNG*
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