NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10000600

Scaffold JGI25922J50271_10000600


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10000600 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10484
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002489Metagenome / Metatranscriptome554Y
F002598Metagenome / Metatranscriptome544Y
F003379Metagenome / Metatranscriptome490Y
F003690Metagenome / Metatranscriptome473Y
F011299Metagenome / Metatranscriptome292Y
F017134Metagenome / Metatranscriptome242Y
F021757Metagenome217Y
F024319Metagenome / Metatranscriptome206Y
F051930Metagenome / Metatranscriptome143Y
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_1000060013F024319AGGMTNRIWESLNDYQVELDAKRLGYVSCSAGCGRVTAWTLCVMCGGNYAEHNTLGVR*
JGI25922J50271_1000060015F000447GAGGMGYIELFRMDNEGAGWVSLDNATPDELLTIEIGLLQEGAL*
JGI25922J50271_1000060017F003690GAGGMTINGVELSLNEYGLEFDSFLGAIYLPWHTIIITALLVTAYKIYKRKKNK*
JGI25922J50271_1000060018F021757GGAMLSKKHYIGIAEILSSYKDLIGDEFTYHDLVEDFAGYFAEDNLLFDAQRFVDACNK*
JGI25922J50271_1000060020F002598AGAAGGMATKLYTIESLLVGKNYRSNSRHFSGEIVSAEARPEIYYGEKTEAFLIEVRTGGLRNKFATIAVKVGE*
JGI25922J50271_1000060022F076101GGAGMYKITLSYDGNAPHWQQDYASEFDAWKDFFAFVDWGFANEYSTVNLYNSEMKCFTRHFYREERKVVTVK*
JGI25922J50271_1000060023F011299AGGMTMTRKHFEAIAEILNYNSNKTHPAVFSKMVLDFAELCANENPNFNVTKFYEASNYVIPKLSTR*
JGI25922J50271_1000060025F017134GAGGMELFTVACLNYEICGDTATFDSVEEYEIYGDDYTCAECYDSEEMEFYEIGGWADSDALASAGHGMDEDY*
JGI25922J50271_100006003F051930AGGAGMRIQYVSTYISMSEEGLVEKLLCPVDQSILFCNQDLADNISLYCLECEYRKDMGSATYQKIVKLVEENRSVQ*
JGI25922J50271_100006004F002489GAGGMQEDLNKEVSNNLEDNLPMVNYIMLHRMYDLLTLISNKIVGSEDTQKMIEYHEAGYLLGPAPSFTPGEEE*
JGI25922J50271_100006009F003379AGGAMKKLYALVSTIAIAILSGVALSKFLNWAGQVEIFDFDLDEDIDKETY*
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