NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10001866

Scaffold JGI25922J50271_10001866


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10001866 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6103
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011063Metagenome / Metatranscriptome295Y
F015718Metagenome / Metatranscriptome252Y
F081250Metagenome114N

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_100018661F011063N/AMIKLKEILLENDAPNIFIPRRMENRVERLIKTYIRNGNKGNLNLQDLNLTVLPEMLKDITVDGDFYC
JGI25922J50271_100018665F015718N/AMGDINEQYPVTNVMWKYMDSMTLGEYLASLGVDYKSYGFIKSFPRSFYLRIGFYEPGYVITTNSHLYXXLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGSDIYNCYVHVTTVNGKSVYCVDVLN*
JGI25922J50271_100018666F081250N/AMNFNYRDFFIHNDDLHIIKEQLSIVDEMAVSKEYALATNAKAVWNMYQTENNEQKIADKLGINLTTVEKIIKICLMKSVENKTVAQISDETDFPVPTIHDVLNNAIPDWKRTHDINFIKNAEEIYNLHKQGKNPDEIVNLINQNRKPYLQIKLDKVNLVLKIVDIATKQMENDGVTNPSEIERQINHTITFVTINRLIKNLGIGKIRYMHKFTPEQDAFILYSYLQRIGPSELTRQFNMKFSTDSNKLNINHGTIYARIKNTILKSNSESEISEYALELLRNYKNEYFSTVNIQDPKTKELLTQYIAPDYVIRKDKTGTGTNRDMSAHLGTVQTNFNTMVTNLRNAHTIR*
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