Scaffold JGI25922J50271

Basic Information
Taxon OID	3300003413 Open in IMG/M
Scaffold ID	JGI25922J50271_10003896 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003413 Open in IMG/M

Scaffold ID

JGI25922J50271_10003896 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4267
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4267

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F010749	Metagenome / Metatranscriptome	299	Y
F019470	Metagenome / Metatranscriptome	229	Y
F054814	Metagenome / Metatranscriptome	139	Y
F061653	Metagenome / Metatranscriptome	131	Y
F099274	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000389610	F099274	GAGG	MATVEGQQVKVGDYVSFKCDIEQSGRIYKIEGDRLFLRAGPDGFEGGYIGGQDTTVQQASDCWID*
JGI25922J50271_100038962	F061653	GAG	MPYKYRVVTECSSKEDCELDFFGRQVLVTTNNYQTARKECIEWAAYDDILVRVINQFGSTKFQCEGAAEAFDRYPKTAEMA*
JGI25922J50271_100038963	F000354	AGGAG	MAKVNYDNFSGFDLNECCDHFDSEKQSNWKKISKFIVADGQEYNEVMLKEFDYDEVNEGEYEAFMRGVQYALTKMNIALDAADLPLEIAEVDLVESLGYMLVRTDDTPESFVKRVMKKPVVMVESWVD*
JGI25922J50271_100038964	F019470	AGGAG	MTITVAQMIQALSALPQDAELVVTESGYYCYGEFATIMLPEAYTVEGEDEDVARGTQVYRIGHSHQSY*
JGI25922J50271_100038968	F054814	AGGAG	MAEVKLGTLYRVTVTEYERGWGQRVDPNDTKIFTTLEEAEAYKARWEEGGTPDYFWRANIDKIG*
JGI25922J50271_100038969	F010749	GGA	MKKFTFWRNSIVSELYVVEAATEDAAREMLHNGEVDVHSEEWMDWATDDYELEHVEIIDPLYKMVKDYNQAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25922J50271_10003896

Overview

Ecosystem & Geography

Associated Families

Sequences