 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003431 Open in IMG/M |
| Scaffold ID | JGI25913J50563_1001094 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5481 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F004695 | Metagenome | 427 | Y |
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| F015330 | Metagenome / Metatranscriptome | 255 | Y |
| F103134 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25913J50563_10010941 | F004695 | AGGA | MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERISENDAIASQQAEKMVTYFINSKNDSYQIIRDLAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDEQGQEPTADDMQEAIRNNTIYRAKYKLTGFSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRKDVDNDGEEEIIEVCYSGSYVLYIKEVDFIPMASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEFIDAEEIQRGVSALFILDRKFDPAKHVFEFQPLQGNLAYIQDSMERFEKDNNRMLGMTSAADTLNPEVMKDGNSGYKLQLAMGPNQIIQDAMVKNCAIGLRDIIYIVWKTMIQYADDYNIQQLADAMSPGQPFLDAKAMENFDFIDRK |
| JGI25913J50563_10010943 | F006264 | N/A | MEDFSALFKQRLSGQAEVCARKSLEWLQKDLQGEYKLLPSEVYYLASAANILLNIRDTYGKK* |
| JGI25913J50563_10010944 | F001059 | AGGA | MATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKIPSEFVTQENPYVDKKDLIPVDELKVLPPRNKDLPEPDTQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELLMRRADGTFTERGRGLYTYLIGEKGGGVWTLIDRDMVSVSAKNIADPWA* |
| JGI25913J50563_10010946 | F103134 | GAGG | MYGTVISGGKQMSKGLTKGINDKLSGFEDENKRRATIATAVNNAFTVRHLSDQTTNNSNNGKFQTVKEKAKVNP* |
| JGI25913J50563_10010949 | F015330 | AGGA | MSDEKVVELKTKNPVGRPKSVVNRVTEYGALFNQLNAAHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |