Scaffold JGI20214J51088_10172106

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20214J51088_10172106

Scaffold JGI20214J51088_10172106

Overview

Basic Information
Taxon OID	3300003432 Open in IMG/M
Scaffold ID	JGI20214J51088_10172106 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1526
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location Name	Sacramento, California, United States
Coordinates	Lat. (^o)	38.1072	Long. (^o)	-121.6485	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007558	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20214J51088_101721062	F007558	AGGAGG	MQTLAHVKLLLLDVLESAFQTGDVHATQQLGVNMSNAVKRDGVVIIQNQNIEVYARIMPLMVKALKACDALEAHGSHPPTVTIEPEHRQLPPPAADDVDTDPIEACCAWLYENHVTWQDMQDLMRSRYLEYVVGRFKTKNEAAKWLGVGNTYLCKLSKTVRA*

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