NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_100234

Scaffold draft_100234


Overview

Basic Information
Taxon OID3300003437 Open in IMG/M
Scaffold IDdraft_100234 Open in IMG/M
Source Dataset NameMarine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18735
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location
Location NameSan Pedro Channel, Pacific
CoordinatesLat. (o)33.55Long. (o)-118.42Alt. (m)Depth (m)890
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005608Metagenome / Metatranscriptome395Y
F010791Metagenome / Metatranscriptome299N
F025300Metagenome202Y
F028833Metagenome / Metatranscriptome190Y
F041248Metagenome / Metatranscriptome160Y
F105339Metagenome100N

Sequences

Protein IDFamilyRBSSequence
draft_10023410F010791GAGMSFEFRAGRKRVVKSVETVEEANKLMRKMIKIRNENSLWENIDVKTGHLRAVDELEKVMGAIFDVYETMSIYVNGKSVRKIWKRGF*
draft_10023412F105339GAGGMMKIDLTGTHEENMTAINNAEISEEFKAHIRKDLQEQVDRCLSSCFGVDLDIEHEKNSIPIHELVPKGMTIKEYFGND*
draft_10023424F005608GGAGMKTTKIEILEEGEFIFGSPTVGKYMVRRYEDEVEMGGGFFKTKKEALTHAREYKKDK*
draft_10023425F028833N/AMNNLTYLWSDGMVDSIAKKVAEEPMENVDDLPQHIIDEERGDAIRQWRKEQAQMEMFDDPYLNWSGLR*
draft_10023427F041248N/AMSPQKRARQEGAIERTQASILVYKEKLKSCEDDTEKKLLKKKIERAKTTIENTKIRK*
draft_10023429F025300AGGAMKKINVETLVPDTFKFLARDMDGKLYAFENEPSVAIDIACDNWDVKEGKFLQITNPVFLSAEGITHTGIDSVLGDWRDSLTEINNENVA*
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