Scaffold ERB_1007752

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ERB_1007752

Scaffold ERB_1007752

Overview

Basic Information
Taxon OID	3300003453 Open in IMG/M
Scaffold ID	ERB_1007752 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0111477, Gp0111476
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Davis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5732
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Volcanic → Fumaroles → Unclassified → Volcano-Associated Fumarole → Volcano-Associated Fumarole Microbial Communities From Mt. Erebus, Antarctica, That Are Thermophilic

Source Dataset Sampling Location
Location Name	Mt. Erebus, Antarctica
Coordinates	Lat. (^o)	-77.533333	Long. (^o)	167.116667	Alt. (m)		Depth (m)	0 to .02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054879	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
ERB_10077524	F054879	AGCAGG	MIDLPASDTRVFLFHSPNAASDPGAAMDKVNAWLGKDRSTTPYANLRIKDISITSDGAGGVYTLIVCSLGQKTTPPTQP*

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