Scaffold NAP4_1047922

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NAP4_1047922

Scaffold NAP4_1047922

Overview

Basic Information
Taxon OID	3300003474 Open in IMG/M
Scaffold ID	NAP4_1047922 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	838
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium HIMB11	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location Name	Sarno river estuary, Gulf of Naples
Coordinates	Lat. (^o)	40.72683	Long. (^o)	14.46133	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051158	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
NAP4_10479222	F051158	GGAG	MQKFGAIFLSLGLTTPASAADYLCDSFEVAFKFYRSNVALEEFDVAGWRAQPFILRDFPVAPYIETAKEEYDLINVADATSALQGDLYLHQMNTLYQMYEILNPHPITGKFTIYNIRTEVSYVSTCERRRIIQSY*

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