NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold nap3_10173900

Scaffold nap3_10173900


Overview

Basic Information
Taxon OID3300003477 Open in IMG/M
Scaffold IDnap3_10173900 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location NameGulf of Naples
CoordinatesLat. (o)40.7255Long. (o)14.44767Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y

Sequences

Protein IDFamilyRBSSequence
nap3_101739001F008925AGGAGMKTTKPKIDAVTLNLINKLKQIYDTINEGAWEYIHLGDILRLQDAFHTAINHFDLKKKGGIGEYGADEGKYTQFWHSDYVCHTDPSAFDPSKVEEEDKNEK*
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