NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25924J51412_1057529

Scaffold JGI25924J51412_1057529


Overview

Basic Information
Taxon OID3300003491 Open in IMG/M
Scaffold IDJGI25924J51412_1057529 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035630Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
JGI25924J51412_10575291F035630N/AFEASFARDESSASSTGVTAIPSQLKITKQILKHWQPFQDLKLQFVGSRRQEQLSSRCQQRIVATVEESVLRMEMAGLESQEEDASQRVLFYKPMAWLGQIRPHRRDESWSAALWQTFFSTSMGAQIPVIAEKPLAVCGCRKFKIDALGDHLCTCTSHSGAKKAHDWAVDQLADLFRTTHKVKTQQVVKSRGQHCGDLELA
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