NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25923J51411_1027983

Scaffold JGI25923J51411_1027983


Overview

Basic Information
Taxon OID3300003493 Open in IMG/M
Scaffold IDJGI25923J51411_1027983 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F002598Metagenome / Metatranscriptome544Y
F006744Metagenome / Metatranscriptome365Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
JGI25923J51411_10279831F017995GGAMSKMKEYIEIIAANCDECGGAGFVFFGDENNYDVEPCECIADLSDELNVEWVNK*
JGI25923J51411_10279832F006744AGGAGMNLDEFKKHVLATRQASKAEALSVLSATITTQPNERENLK*
JGI25923J51411_10279834F002598AGAAGGMATKLYTIENLLIGKNYRSTSRHFSGEIISAEHRPEIWYGEKTEAYLIEINAGGLRNKFATIAVKVGE*
JGI25923J51411_10279836F001562N/AIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELEDET*
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