NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26244J51143_1009566

Scaffold JGI26244J51143_1009566


Overview

Basic Information
Taxon OID3300003495 Open in IMG/M
Scaffold IDJGI26244J51143_1009566 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2369
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005749Metagenome391Y
F037260Metagenome168Y
F101492Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
JGI26244J51143_10095663F101492AGGAGMFKTAAELGREFRSEIIPMLKSKGFDLKIASSRKSYYHDGKLGVKITKVPTNFPVWVSKYSRWDRTKNADRLLATIEDRINILISNNNVKLETKGDGGLDIRVXVEFGQSVKYIPYEKDESDNE*
JGI26244J51143_10095664F005749GAGMNKKSWLLTMSFDEHDGSPNNIKTLYHGRAKRDMVKDMNLFQDMNEHLVLALVEIDEKSTYDKIIDKEDTEEMFFMDSKKNWNDGKTYEDLKDEVLEEILTGSLINGDMGYA*
JGI26244J51143_10095666F037260AGGAMSKKKKDVPFHMKHNYKQWTSDQGYTFWAKDEQDAKSYLEKTEGNLGSLKEVEVKDV*
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