NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25925J51416_10015422

Scaffold JGI25925J51416_10015422


Overview

Basic Information
Taxon OID3300003497 Open in IMG/M
Scaffold IDJGI25925J51416_10015422 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2285
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029757Metagenome187N
F047683Metagenome149N

Sequences

Protein IDFamilyRBSSequence
JGI25925J51416_100154222F047683AGGAMTLTVEQIESTFAAPAEGLADSYYPVLAYWIPIEKLEEVRAAYRTTNTTIRIRYRGPRSVAIGREMTRNDKTTYLRSRHRAMQDCLIADATHFTIYDYTSR*
JGI25925J51416_100154223F029757GGAVRFFVYIIVKTLYPGYMMMKGNTDMLTLSDINALTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQLEQQQVEQARNFVEFVARVEETMQIVEGATRERAIEIIADAEGISEGEFDFYGLEILEYRFELKFGSISRWLSE*
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