Scaffold JGI25930J51415

Basic Information
Taxon OID	3300003499 Open in IMG/M
Scaffold ID	JGI25930J51415_1000011 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003499 Open in IMG/M

Scaffold ID

JGI25930J51415_1000011 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33205
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (17.65%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

33205

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (17.65%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F020344	Metagenome / Metatranscriptome	224	N
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25930J51415_100001113	F008073	AGGA	MKKTILTHLEKMEFVCGLKQFKEYKIEEAEQLLDCLNKLFSSFGWMTETRVDYILHAGLRGQYGDFYHVNEKTVNGWISQYYQHHQSQIVQEVQAANNKEKEATDEEIAYWIEIGKQIFRDNYEYAKETGHCKDLAEWGINWFNKFQEKGILKPWKFPVDQIESDVRREMRINSKWIDESSVSAKAKNRIWKMFILQSIQEKRNLDKLI*
JGI25930J51415_100001121	F047062	N/A	MKYNSENYYDQEIIFTYEGKDYIWIGDYSIDHTYEEESEFAPAYGEMEVTIDYTSSLSCYDEANVIPTRSILMAVELEIERNY*
JGI25930J51415_100001122	F008081	GGA	MEERQIINPFGYGNASRVIDENRKPADWWTEFLEINLEVVENEFYVLFRNGSLVKKGRSKFRSSQYLLGDRFKSFRQTYERL*
JGI25930J51415_100001124	F036704	N/A	MWLEIDVMLSGSTMDWKELGLDVKHEFVRRMVRLDDIAYVQELVHDIQVMYFYDKTSVLIRGEYQRIRDEILHLEDEED*
JGI25930J51415_100001125	F001775	N/A	MIDSEKTKIAAVSFLIGAIVAIILFPKKEIETVYKTEIKKESDTIYVASTDTIYIPKTRIKTQVLRDTILIDFKPKIKAFETTFPFDYGSTKVSGEVLGEVLKMTAVNDYTLPVVTNTITETKTETIIKKSKGIYLGAGVNSMLKPSAKVSYLDNKYLFEYQYSPMDGVHHVGVSKKLF*
JGI25930J51415_100001132	F029443	N/A	MTLSELVAKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVIRPSQYATSVVRYRAVLLFADLLTEDKSNRLQVQSDQMLVALDVLAKLKLDTAYSFNPSTNANMEFFQERFDDFTAGVSIDIEISSPVPLNLCAIPTT*
JGI25930J51415_100001135	F020344	N/A	MVIIEKGEASTIYIALFDKRETSSDTYTFLFQHEVTKEEVTLSLADVSQSKERYSEFSILEASFQNSTVGFWRYYVTQTGSGADIIATGKMELIATNLSTAGVVRYNGYNGNYKTYTV*
JGI25930J51415_10000119	F005529	GAG	MPRMLPASKPDYSLEIRFKNSSGEWSQWINKGKGLFQTIEIVQHQIRLISAPHRGKEIEVRFEWNGWLCDYSGQPTGEVIRFK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25930J51415_1000011

Overview

Ecosystem & Geography

Associated Families

Sequences