NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25930J51415_1000015

Scaffold JGI25930J51415_1000015


Overview

Basic Information
Taxon OID3300003499 Open in IMG/M
Scaffold IDJGI25930J51415_1000015 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32004
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (91.84%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y
F057906Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
JGI25930J51415_100001513F001515GGAMVKNSSFDLDFGYGRKGEQLVEELLTGGRTVEVKRDRKWWITNNLYIEVECWFNKSKAWEPSGLSVTEAAYWAFVLEQSTVIVPTHILKKGIAELGREISCEVPPNKSKGYLITVEDLLTMTRKYKNEKE*
JGI25930J51415_100001514F001531GAGMDWKRIERWEYVVTAVASEYAKKFTICEYEDIKQALYQWFAEHPNKLDTWEAIGEKDAKNLIYRSLRNEALDYCQRWKAKTVGYDVSDLYYYEPGLVEVLLPAVLMGNFHIAPKLNLSGGGRPSAPAEGGNIQVMLLEVDSAYWKLSKEDRKLLFFRHAESLDFKEIANFLSLGTEDAARMRHKRAIKRLVNKLGGYKPYYDEDLDKPDSNEGDESNSSDYGIDVSTTEESTGGEE*
JGI25930J51415_100001515F057906AGGAGGVVTYNLNTEDVSNLIKAHLCYDLEITTAEDYTLVRSDSDKFYGMVKTYEAGNVILTKDDHQKIITGATDDYNSLFIAVTPEGVFQFNLSLLRLQFENYVDHSAGIDVDVAELDISNGTQILEWYPEFASEDDYVDALMSNGDSIGFDESESW*
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