NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ51221_10063450

Scaffold JGIcombinedJ51221_10063450


Overview

Basic Information
Taxon OID3300003505 Open in IMG/M
Scaffold IDJGIcombinedJ51221_10063450 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1428
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.53312Long. (o)-72.189707Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045285Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ51221_100634501F045285GGAGVINKINICTALIVILTASALSQSKDTRIGDCYAKAALRAVIFTNEGVTQERVSFLFDEADVEASTPAEEANLKELSRILRLWISRTSNDNQVCYQALKINLKARNGAIPEVCK*
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