Scaffold FS821DNA_1035442

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FS821DNA_1035442

Scaffold FS821DNA_1035442

Overview

Basic Information
Taxon OID	3300003514 Open in IMG/M
Scaffold ID	FS821DNA_1035442 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS821_Marshmallow_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1120
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location Name	Axial seamount, northeast pacific ocean
Coordinates	Lat. (^o)	45.934	Long. (^o)	-130.013428	Alt. (m)		Depth (m)	1544
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034764	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
FS821DNA_10354421	F034764	GAGG	MFQNTRNKTPSVFVPIEYPELAEGEEIKPYQPGLICSEWLELELVEPSEHN*

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