Scaffold FS896DNA_10254352

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FS896DNA_10254352

Scaffold FS896DNA_10254352

Overview

Basic Information
Taxon OID	3300003540 Open in IMG/M
Scaffold ID	FS896DNA_10254352 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	760
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location Name	Axial seamount, northeast pacific ocean
Coordinates	Lat. (^o)	45.926575	Long. (^o)	-129.979479	Alt. (m)		Depth (m)	1507
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F032307	Metagenome / Metatranscriptome	180	N
F036732	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
FS896DNA_102543521	F032307	AGG	LVVQKLLLQEGLKRTKQYSVSVLGYDFVGLAMRLGLFLTVGVLIQAYFTATITGSSWLNIVAGFFNIKFPDTLPEWLTKLFTTGYNGI
FS896DNA_102543522	F000730	GAG	LVNEFIPPEIIPLVWFSCIAVTIYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVKDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLSFVKAI*
FS896DNA_102543523	F036732	N/A	TAVMKAFYESGISLHLHPDLSHADGVFKYKKDRVSMLGQ*

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