NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008451J51688_104859

Scaffold Ga0008451J51688_104859


Overview

Basic Information
Taxon OID3300003554 Open in IMG/M
Scaffold IDGa0008451J51688_104859 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_04_M0_20 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1159
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081198Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0008451J51688_1048591F081198N/AAERIEKSNSETLKAVIETVKENWNPKSEVAESTNSGYVEEAYTEEQGQAFMDKLFETGYNKLVLEKEGWIESHSFTKQTGNGEVQEAVSTSGTVPGVKQSSNISIQLGSKTAIPIRQYGQFQAVPTGQNTARFYRITVPDAGAITESPTTDITAVTHTLTAIDVTCNIRGWRQVVEKANLEDYPASFLNAIRETARLEAIRDEHKLILQDLGALDHDFGGVTTAPYHIGGSDGAATSNPTEEDADGELDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFESLISSTSLSEYTQIGNAGITRLGQMERLYGIDIIVTNELLSANNASRNLVCVKGKCWGLASQRKMEIEFQKNIAGQYWDIVWTHRVGVDILDPNTYVIVSTVN
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