Basic Information | |
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Taxon OID | 3300003574 Open in IMG/M |
Scaffold ID | Ga0007410J51695_1068897 Open in IMG/M |
Source Dataset Name | Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 566 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis methanolica group → Amycolatopsis thermoflava | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Hopland, California, USA | |||||||
Coordinates | Lat. (o) | 38.972988 | Long. (o) | -123.116539 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F075770 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0007410J51695_10688971 | F075770 | GGAG | MRRSLIVPLALLAIVKSPAAAQTCQGLASFSHGQLQVAGNAQFPTGGKIWGGSLTYGLPSGLYAGADLSTTSIDNDGGSSLGLGAHAGYQMKLGRTQKIALCPVANLALGMGPDDEAAQINSSQTNMNFGFALGTEMGATQQMRIIPTAGLGLQYSKLKVEDTGPGGQTIEGSE |
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