Basic Information | |
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Taxon OID | 3300003575 Open in IMG/M |
Scaffold ID | Ga0007409J51694_1004582 Open in IMG/M |
Source Dataset Name | Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 654 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Hopland, California, USA | |||||||
Coordinates | Lat. (o) | 38.972988 | Long. (o) | -123.116539 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F066349 | Metagenome / Metatranscriptome | 126 | N |
Protein ID | Family | RBS | Sequence |
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Ga0007409J51694_10045822 | F066349 | N/A | MRGKISVDNNETPLLSIDFKEDIIVDVKDTSIFELIETDNKTESKLSFWDIIKDARDFAEELKNKKLTIILNIKGKETLIIGEKAKPSISQILSKSKNIEIKSVVE |
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