NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007409J51694_1008083

Scaffold Ga0007409J51694_1008083


Overview

Basic Information
Taxon OID3300003575 Open in IMG/M
Scaffold IDGa0007409J51694_1008083 Open in IMG/M
Source Dataset NameGrassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.972988Long. (o)-123.116539Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056193Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0007409J51694_10080831F056193N/APYDTCGTADPRFAGLPAPLRATSGVWVPPSRLPPSFLPTPFGAGASLGFSLQGVLLATISTPSGAPCPLGVFHVDSPRPHGERADAAAFRASIPSRARSAIPDPEGPGAPMPSWALTLQSVHSPLPSPPLWIAGDPLARIGRFDVPARLRLRVFRLEEIGCPLSGMPALMGFFTFRPSRHRGGRGGGRAHGFTSRLARVAGGANRSEPPRITNPATAFAAARYRRPSVNGCLPLPIV
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