Scaffold Ga0007409J51694_1020085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007409J51694_1020085

Scaffold Ga0007409J51694_1020085

Overview

Basic Information
Taxon OID	3300003575 Open in IMG/M
Scaffold ID	Ga0007409J51694_1020085 Open in IMG/M
Source Dataset Name	Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	756
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus massiliensis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location Name	Hopland, California, USA
Coordinates	Lat. (^o)	38.972988	Long. (^o)	-123.116539	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016526	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007409J51694_10200851	F016526	AGGAG	MRNRKYLIGALAGVIGALALSGVANAAVTGQTLQTTLSPTKQSAKQFGGVSLHNIISTTIDNPATTQSPKTTVFTIDPNVKFTAGNIPPCPLSSIQGKFTAQAQAACPQSITGGGSVEVNNGAVGGTVTFFSGGPNTIYVQTDIGPGATSLTIIGTIQGRILTFSNIPNTPGLILTKFDTTFNKRKTGKKSYYVSARCKKGKWKTSETTTFYSGEVFTAAAAPMKCKAKKTK

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