NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007429J51699_1045483

Scaffold Ga0007429J51699_1045483


Overview

Basic Information
Taxon OID3300003579 Open in IMG/M
Scaffold IDGa0007429J51699_1045483 Open in IMG/M
Source Dataset NameGrassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)618
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Mobiluncus → Mobiluncus curtisii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.972988Long. (o)-123.116539Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005199Metagenome / Metatranscriptome408N

Sequences

Protein IDFamilyRBSSequence
Ga0007429J51699_10454831F005199N/ARMFETKRVLVSLLVITGLIKLFLFGSIIYALLTSVYSTISLISTITFAIYVAVHFFGLTSAVKENACGLKAFSVQQIIFVVLYVVLLLFFVWGQMSLYHHSTSTDNAVNNVPQTLNKYQEGQDVLSDAKKPEEVPTTGCNKWNRYAPLIKMGLFIFTTFIDLITAILAWKGYKLLVASRAVQTLTDLSQTEDREMMMTPTSNNVV
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