NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26249J51723_1001181

Scaffold JGI26249J51723_1001181


Overview

Basic Information
Taxon OID3300003585 Open in IMG/M
Scaffold IDJGI26249J51723_1001181 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8348
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005337Metagenome / Metatranscriptome404Y
F041622Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
JGI26249J51723_10011813F041622N/AMMDIELHYVSNRTLDNGLNKNIININPHILHSYEVIKERNNYWGIFLRDKDTIIGNTMVVYEKEDNIEYLLLVSVYIDDKYRGRKLCKALVEQTIIKNEMRNKTNLIKVVIAGGMPILQCLLSVFKELNYTIKKYKTKVENIQILQNIRPETAIKIEQSNYENDIWQTLFFEKNDYTFSHFKRRL*
JGI26249J51723_10011817F005337AGGMQLISPYELEKDHTYYIERFDEGVRTNKYRGTIKNLNICTWYDHSVISIGNMIEYVNGQETISSDRTSPTFPGNSYYVHVNTNSSEDQYWVFYKPVADYLLTAQLLRQSLHLDKVTIWGLYNQHICPVIQIK*
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