NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26270J51728_1045288

Scaffold JGI26270J51728_1045288


Overview

Basic Information
Taxon OID3300003599 Open in IMG/M
Scaffold IDJGI26270J51728_1045288 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_10m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)601
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062497Metagenome130N

Sequences

Protein IDFamilyRBSSequence
JGI26270J51728_10452881F062497N/ATDIKHNIDQIGVLQKEIDEIQKKLKPLKKEYGELIDNVLPILSKLGKEQMKTRNYIFKIIRKGYERQSFQYKEGFNKALGKVNNNIKKILEQILDDTKKMVDVKPKFQISPINEGFTDWLKSFTRKVLKNIIKPMKSVVSANKDLRKLI*

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