Scaffold JGI26082J51739_10005667

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26082J51739_10005667

Scaffold JGI26082J51739_10005667

Overview

Basic Information
Taxon OID	3300003617 Open in IMG/M
Scaffold ID	JGI26082J51739_10005667 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6861
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101258	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26082J51739_100056676	F101258	N/A	MKLWIFTAGFLASTTLLGQTYAGLGFGVTTGAGLYAEHYVHPKWSLEANIGVPAVGFGVNYVLHDSRRRIQNGKLYSAEKLFPRGKTSVNTGRLTAGITFTGAVIPDVGLFQYRFWNLGLHKTIRKTDFGMELGLMHGAIVNGPSGSTYPQPFASPGIQFTLGRALFQPGPXKRLKQRASSF*

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