Scaffold JGI26273J51734

Basic Information
Taxon OID	3300003620 Open in IMG/M
Scaffold ID	JGI26273J51734_10000245 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003620 Open in IMG/M

Scaffold ID

JGI26273J51734_10000245 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28099
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (25.58%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28099

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (25.58%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F016832	Metagenome / Metatranscriptome	244	Y
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26273J51734_1000024522	F016832	N/A	MSDLKYTMRTFYVPADKLETLVKFQNKCKELGHKSYSKVLLKLMEDFNDG*
JGI26273J51734_1000024523	F081203	GGAGG	MMDKYEFYYRQKQEWDYWQANQRHNFLSDRLLAIISQVQWNKGILKRVKLSDNDLEIHQNRFSNLITXVVKISIELKELAINYNPKRMKQLIXILTKIKNHNNEPIXNS*
JGI26273J51734_1000024529	F005706	N/A	MKESKVLKALGLSWLDIQNMLTNGMTMPEIAKKYKITYISLVQAYRIQKKDFKYIDYKQPKKEVEDIKIVSSSFDRLYTEESLNENELLAFYKYEQKNKAYFDFN*
JGI26273J51734_1000024533	F038672	N/A	MDELDIILRKNRLDIMIIKASAEVEKNNNKVKKEGLEVLMDILELIHDLQHEIRQNYKDIAKLKYENAVAYKENAIIKSEFSTYKHNLKKAELESNKNE*
JGI26273J51734_1000024537	F030436	N/A	MKSTLKKIAEIIKDYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHKDYEKVIHDRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVIDAMRTNISFLKSEMYNVTKEY*
JGI26273J51734_1000024538	F056150	N/A	MDRKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLIDSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS*
JGI26273J51734_1000024541	F043411	GGA	MILEKTKKEMLKRRLTYNNKRVYIKSLSSKIAIVSHTEEGNYKQFKVNIEDLVEFK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26273J51734_10000245

Overview

Ecosystem & Geography

Associated Families

Sequences