NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008457_1025564

Scaffold Ga0008457_1025564


Overview

Basic Information
Taxon OID3300003681 Open in IMG/M
Scaffold IDGa0008457_1025564 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_48_BLW_10 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1694
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017488Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0008457_10255642F017488GGAGMAFLLNGAGDVISFAEYTDVVQKDQRIFEENNLVIPTESGFNSINDFVENMLELGTQRILLKIKASTWWQAYNNYVGNTISNLNSLPNVNPTLVDPGNLQGRQQQFTDLTVYYTMKEYILPLISEFELENADMNKILYYEGKFNELFNELISLADWYDYDNSGTVDADEKLLTYAQTRRSRSRRTVVKIR*
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