Basic Information | |
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Taxon OID | 3300003683 Open in IMG/M |
Scaffold ID | Ga0008459J53047_1045618 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_54_BLW_10 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 917 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | Monterey Bay, California, USA | |||||||
Coordinates | Lat. (o) | 36.25 | Long. (o) | -122.2099 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F062808 | Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0008459J53047_10456181 | F062808 | N/A | IVEEYILLSALLHVFVALKRTWDLKLKMGIMSGQLNLAISGVLLLTFMTIHLFQFRFGETQPYIIRPPPYLINFWAILGLRLSLFWCDQSFEDCPATTPEIPVRDIYKLEFDIFKRPTSFPFGNKDEGGYCGWEPVEGWVLPCVEIQNFWAGFYIFSVVIFMIHACLGWKKVVPALGIPMGHHKRVNIIGYLIFWVLGAIYISFPAYCMMQKQRFCGWEADSSAFGSANLLNDPSTQDCVQVNRG* |
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