NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0061020_1070327

Scaffold Ga0061020_1070327


Overview

Basic Information
Taxon OID3300003688 Open in IMG/M
Scaffold IDGa0061020_1070327 Open in IMG/M
Source Dataset NameCoassembly of YNP Bryant MS undermat 2012 and YNP Bryant MS upper layer 2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076715Metagenome / Metatranscriptome117N
F085751Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0061020_10703272F076715GAGGVWWKIEPIPXXEXEDWERALVRCENRAKRDPMSRAVGVFVIFVREGGTRPEYAPGDKAPDGAYLVGKWTLKKKGWMWYD*
Ga0061020_10703273F085751GGTGGMTDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAADWAGGVRGVPAGVAAACFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLSTGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRML
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