NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1000153

Scaffold PicViral_1000153


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1000153 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)122091
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (23.29%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016734Metagenome / Metatranscriptome245Y
F025852Metagenome / Metatranscriptome200Y
F028316Metagenome / Metatranscriptome192Y
F033590Metagenome / Metatranscriptome177Y
F033600Metagenome / Metatranscriptome177Y
F035326Metagenome / Metatranscriptome172Y
F036473Metagenome / Metatranscriptome170Y
F046017Metagenome / Metatranscriptome152Y
F056154Metagenome138Y
F072246Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
PicViral_1000153102F056154N/AMTDYDNLCERYMTRQVRSFYPRKFELSQEFIEAFKLEYSRLSESGQNRRTLLERIRKALSFHL*
PicViral_1000153127F046017N/AMDIYFNGVEYKPTEKEVEEITFLGTKTLQAKVKPQLTIFWNPLTWDWTKVGDKEAYETKYKRKTRAVYFKDKVFLVENSKFKKGIVDDDFVDTAELPIGIVVYWEADTEQWQMLGYKENLLR*
PicViral_1000153133F016734N/AMNKKQKQHYENQLDKMKLTDQQREAFDHDPKTSLIDLERYDGGTFSLQGYKLSKVLDDIVLAQFVDLSNDGKSVMRNGIHIPLSQVQRTWRLAKVILIGPKVQYTTVGDIICFPDDKGIKVDNMSITGYDESLRDCIFINEERFFGICEELEDHDNKLS*
PicViral_1000153134F036473AGAAGMITSLASLKATLLDKVCEVKFARRSLKPGRPATRRMLCTNNVQLLNSVEGRVVLNYAPPRQGLKYNPNQENLIITWDILMQDYRTINCDTVDLISTLEADQTFWAYLNEKIVPMTAGQKLDFMNT*
PicViral_100015358F072246N/AMINKSPTRDYSHLARWLCLFEAVNIISDKAEKLGHSPDCLKPIPINKYINERFHSVLKDVEYEFSNNHHTHRR*
PicViral_100015360F033600N/AMMKGILFEDLYKYTNKYWKDVKARHVRPTTKTLADIAKASPKTYNRVKADLIPFPGDHLIEQLGSAFKNISDATYLINQLADNPAVHLNKKIVKSATFKLQKIQDLIKSVSEDLDHDESDS*
PicViral_100015361F033590N/AMGKFENKFLSLLKEDEFDDPVSAIAAGPEDDAQSFANTLDDPSNASEFEDVIDQHPNELKELEDLQEWIGNIDEVIEYLNGGIGSVLGQLRSDNKIGTIFSDVSDATKSEVLDVVERLASLNQIFKNLYLEKHK*
PicViral_100015370F028316N/AMKKTTPKRKNFDNLLKSNINAIESNDINEQDMSFINDYLIEHLKSFILVGYDIRGDSVLLISGKTPQDYDAIETLLRRVSSLDFFKEIQEQTNTRNE*
PicViral_100015371F035326N/AMKNKVTTCGYFIKRLRDNGYTVNRIFSDYSHQDSRRWTLMVNPKTAALYITCYVNYDWSGDFKFELHDGNHFKNFQLKTDSMEVIITKLIEKQITSNEENNT*
PicViral_100015385F025852N/AMDIITYIDSIGRTCFGELIEKTESNMRVKSPAMIMVTPNDASNMKVDVMPLFFTEFSSGKPAIFNYTNDQYTELEVTISDKILEHYTGKINVNVVSEPNPEPPVEVLEENIPEVTLFED*
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