Scaffold PicViral

Basic Information
Taxon OID	3300003690 Open in IMG/M
Scaffold ID	PicViral_1000420 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21691
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (76.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

21691

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (76.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	53.0	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Mid-Cayman Rise, Caribbean Sea

Coordinates

Lat. (^o)

53.0

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F024572	Metagenome	205	Y
F025052	Metagenome	203	Y
F054926	Metagenome	139	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100042025	F025052	AGGA	MARSNIPLDFPPPDFARIREESGSVTEQAVRSLYFSSLDTRRRLQRIQKELGWYNMPFDADNFTANSGTWTVASADQKLLRFIKVGQFMTINLFLEDTSTSSGMGNELRIQIPRGIKASSTLFTGPLTIRGSVDTEGYMTTGGTDKLYCYRTDHAAWPSSITDNVDIRGVISFQAAQ*
PicViral_10004206	F054926	GGA	MVLSGAPVAEVVPYFCASGVAEDLLLQCEEAWPMQPSVLAAIEAQSGGVPWHKLGDDQRLDVSLRKHYNEMAYFLWTTNYAACDGASKLKADTCRSALEAKVAGMAGQESPLARFYHDLLARFDTEEATPQ*
PicViral_10004207	F024572	N/A	MPVTPVPVALRDRLISEFRTFVCRQMDFVPFVHQAAWWATTDGYTLTEEIVDEATPQAVYVRRPDGTCVWLRQIPRPEGRAKVVAELGAYKSGKSAGAGLWGAAFGAVPHATVYLVGNEYDMCAPEFDYLLEALCSERGLNQKYTSLQNRPKDGRLWLELDNGARFEARSWERAESLKGKEVDAYIYCEAYQLPGIECFTSVSQNLRVRKGYAVFPTTPDRPWVQVFHDHGHGHQDFPDWVCHCGIPAQANPYSFNQEAMDRDRHLLTREKFSIAYLGKLGTYVGRVYNYQRGERAMTLENEPRFWRHDGQGAVRENARVPDDWQIEIGADTGTYCAAVVVGVSPEGRAYLLDELTNYRYVANTPELDDDGSIVRWCNSLIRMAALWRTRPIAWVDSNSQFKRECLHHGVHLLANAQGREVRTEAARQYFQHDQIRLAPWLSMVPYELEYARWPDHATAAGRYERLKVNDHTLDCVEHVLSRHPRARTRPSHAILQPPMGSVQWLGSGVRKKAHRAPADAHLGDA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold PicViral_1000420

Overview

Ecosystem & Geography

Associated Families

Sequences