NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1000543

Scaffold PicViral_1000543


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1000543 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18443
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (76.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064627Metagenome128Y
F077177Metagenome117N
F091871Metagenome107N
F103080Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
PicViral_100054311F077177GAGGMAKLQLGGGAIFRNQRKVEKLTMAAEYKPDGHPKAPELSGDVGFTKEAVKMLVAQFKEKKTEVSAVTNQHEAKLEIAASIKMQRDGVTPYLSVWFSEPYEKPQAAPVSDDLDDDIPF*
PicViral_100054315F103080AGGTGGVGTRPGEPALGNKARVSELGIWREVIRRALRDLCEPDASLRDEAVEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRAKVYLTEVMEVTDRDGHNRTID*
PicViral_100054325F064627GAGGMVKFSQATPFVGVVNNARQKKLPHGTQVEVRIIKDGAYGPYAMSFVEGRDKPVFLNPDYVDYVSDVSAERQAELDAQKAAWLAEKNTPVVIGPGEPHSSGKSIVVNVFVDLESTDQSSTRRTFFPLSQVTEVDGVYSAPPWLARINAVDAAYYWVSQGGRKGVDHFGGAGIGAHYVDGASYNVSVSDLHEAADRAAERR*
PicViral_10005438F091871AGGAGGMAGAKGRPRRMDTAHSTYNVLLPDTTLTAIKAKADTSGISSAQVVRTVLADGLEKKAGTIRNWCSAIKIAMQAVRDAYPTPKFPDGKTLGDQIASKIAAASDKEKDGPDG*
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