Scaffold PicViral_1000752

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold PicViral_1000752

Scaffold PicViral_1000752

Overview

Basic Information
Taxon OID	3300003690 Open in IMG/M
Scaffold ID	PicViral_1000752 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15992
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (92.59%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise, Caribbean Sea
Coordinates	Lat. (^o)	53.0	Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F070569	Metagenome	123	Y
F101893	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100075220	F070569	GGA	MKNKWELVLEKDLGKVRIETYSTKKIAEEERDNRNRLCIAMGYTPDVRYIVREV*
PicViral_100075224	F101893	AGGA	MTFIVIQMENPLDLENISVLPDENDLKVKQFRNEEEAVKFLVKYGMIDELDHDAQIVRLH
PicViral_100075227	F022285	AGGAG	MKQQKIKWGNEDVTMLELFKELDKLVCDPVRNMQEMDGDMYMSDYQKLSQAFWRISNTLQELKDD*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.