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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003690 Open in IMG/M |
| Scaffold ID | PicViral_1002752 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6568 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mid-Cayman Rise, Caribbean Sea | |||||||
| Coordinates | Lat. (o) | 53.0 | Long. (o) | Alt. (m) | Depth (m) | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000720 | Metagenome / Metatranscriptome | 923 | Y |
| F003020 | Metagenome / Metatranscriptome | 513 | Y |
| F004988 | Metagenome / Metatranscriptome | 416 | Y |
| F009812 | Metagenome | 312 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| PicViral_100275211 | F009812 | GAGG | MFDEFEIEWLPEDTGAPYEVDMLQSDTPAHTVDKWCKEKYGHTNWARMGMMSPEELHGNPHEFDLTQGIIYFKNARMV* |
| PicViral_10027524 | F003020 | AGGAG | MPDISKFKSVSVSAATHTQLEKLAKNYFEVPVSVQKIIELLLNRELKKKKNGKNSS* |
| PicViral_10027525 | F004988 | N/A | MEKTLVKVICPRCDGNGYIKLLSSPGLVEYDCPQCEEAITHMGQRITTHNGYVMLPIKDTRKNIEGGHESKTKWSGETLPEVGKIHEQH* |
| PicViral_10027528 | F000720 | GAGG | VTLIKENRAVRLEIPNRMRSTTFALPIDHRKVIGIVNYTIDEGGITPIAFWIKLKPTDSYLDRELRASGKLISRCLQHGEDLKELVDTLSQDNIIGQMVNYFQKNMEEIIMGSPTDKKQRMLSTDPYAMKE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |