NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1003018

Scaffold PicViral_1003018


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1003018 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5291
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035492Metagenome172N
F071659Metagenome122Y
F077816Metagenome117N
F090889Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
PicViral_100301810F071659GGAMKIKDWVKIEDSMTDLMGWDAGIDSMCEAHREVAPKKPIYELSEREDKKLIFRLRKRYSKYKEGNN*
PicViral_10030182F077816AGGAGMKNKKKAVFVGIADKIQIKSKSYVMKMLYKRAKKNPFMADKSYEEYLEYIKSQVKLLEGIEIKADTEEEMYNALKSLGWLKEISVLAVYIITANYGIA*
PicViral_10030187F035492AGGAGMADVGAILESKNSQDSWYDPTQDFSGPMPEGEYKAHVKSLNIKRNVVVKGKFLSDIYEVIFTVADENKDMEYQDDKGDPLNGATFVGRDFRSKGFFRFKKPSKSEYPKLSENMGSNRSYMELVNSFGLSMEEVDGKFYLPELDSSDIEGLPVIAKLYHDTWVNSDGEEKITPKASAIFNWEEGERKEEDLPF*
PicViral_10030189F090889GAGGMSNLKFKELEECEPLLKRVRIEKSEDMTEKDVEDFCDWVCAKATRLGFDVREINENKRLG
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