NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1005697

Scaffold PicViral_1005697


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1005697 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3031
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027317Metagenome195Y
F027816Metagenome193N
F043886Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
PicViral_10056972F027816GGAGMKSFRDKQHEVAYNMMQISVELIDEVFSKVDRLAKKNAHRERNGLKLIDSGHFRWDIRQLRINTKDKLESIMALLEAYGDETKLIMEKEEE*
PicViral_10056976F027317GGAMSKEKDPTNNIDTESPRRILLPPKKRLVTLESSSVIPATELLLHDAKAIIGAELAHYRSKAVRGVTLDPKEARIVQGYLESLVKIQKEEREIAATQDLSTLSDVELLHLAKRVLEANKNNNKETTNKQKE*
PicViral_10056977F043886N/AMKSKDKLLTKKAFKELQREWYRRLDASGFNDIERSGKQRHVYFDEYGGILKKPLSVLRRQLNIFTYHYYDIACFLSYNATFLPRIDRKVLKLHGNGYTIQSISNYLRENFEYPLNKKGRKGKPYSVFYVHTKLKYLKLLILVYSNTNCLETVKKSWQSI*
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